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Modeling the effects of structure and dynamics of the nitroxide side chain on the ESR spectra of spin-labeled proteins

机译:模拟一氧化氮侧链的结构和动力学对自旋标记蛋白质的ESR光谱的影响

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摘要

In the companion paper (J. Phys. Chem. B 2006, 110, jp0629487), a study of the conformational dynamics of methanethiosulfonate spin probes linked at a surface-exposed alpha-helix has been presented. Here, on the basis of this analysis, X-band ESR spectra of these spin labels are simulated within the framework of the Stochastic Liouville equation (SLE) methodology. Slow reorientations of the whole protein are superimposed on fast chain motions, which have been identified with conformational jumps and fluctuations in the minima of the chain torsional potential. Fast chain motions are introduced in the SLE for the protein reorientations through partially averaged magnetic tensors and relaxation times calculated according to the motional narrowing theory. The 72R1 and 72R2 mutants of T4 lysozyme, which bear the spin label at a solvent-exposed helix site, have been taken as test systems. For the side chain of the R2 spin label, only a few noninterconverting conformers are possible, whose mobility is limited to torsional fluctuations, yielding almost identical spectra, typical of slightly mobile nitroxides. In the case of R1, more complex spectra result from the simultaneous presence of constrained and mobile chain conformers, with relative weights that can depend on the local environment. The model provides an explanation for the experimentally observed dependence of the spectral line shapes on temperature, solvent, and pattern of substituents in the pyrroline ring. The relatively simple methodology presented here allows the introduction of realistic features of the spin probe dynamics into the simulation of ESR spectra of spin-labeled proteins; moreover, it provides suggestions for a proper account of such dynamics in more sophisticated approaches.
机译:在随附的论文中(J. Phys。Chem。B 2006,110,jp0629487),提出了对在表面暴露的α-螺旋连接的甲硫代磺酸盐自旋探针构象动力学的研究。在此,基于此分析,在自旋Liouville方程(SLE)方法的框架内模拟了这些自旋标记的X波段ESR光谱。整个蛋白质的缓慢重新定向与快速链运动叠加,快速链运动已被确认为构象跳跃和链扭转势极小值的波动。通过部分平均的磁张量和根据运动变窄理论计算的弛豫时间,SLE中引入了快速链运动以进行蛋白质重新定向。 T4溶菌酶的72R1和72R2突变体(在溶剂暴露的螺旋位点带有自旋标记)已用作测试系统。对于R2自旋标记的侧链,只有少数几个非相互转化的构象异构体是可能的,其迁移率受限于扭转波动,从而产生几乎相同的光谱,这是轻微移动的氮氧化物的典型特征。在R1的情况下,受约束链和移动链构象异构体的同时存在会产生更复杂的光谱,其相对权重可能取决于本地环境。该模型为实验观察到的光谱线形状对温度,溶剂和吡咯啉环中取代基的图案的依赖性提供了解释。这里介绍的相对简单的方法可以将自旋探针动力学的现实特征引入自旋标记蛋白质的ESR光谱模拟中。此外,它提供了一些建议,以便以更复杂的方法适当地说明这种动态。

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